Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTATLTKTLGSLDDFRGTLCVPGDPDYPRVRAIWNGQVAREPALIATCHDACDVRTVLRRAVDAGMVTAVRGGGHNVAGTALCDGGVVIDLSAMRAVSLDPATGRVRVQGGATLADLDHATVPFARVAPAGIVTTTGVGGLTLGGGVGWTTRRFGLSCDNLVAVRLVTAAGDYLSVDDERDPELMWGLRGGGGNFGIVTEFEFATHPFGPVAVAGFVVYRL--DDGPAVLRGYRQFAAAAPEEVTTIVVLRHAPPAPWIPVDQRGKPVVMIGAVHTGSIQTGIEALRPVKSLARPVADTVWPTPFLAHQAVLDAS--NPAGH-RYYWK-SDHLAEL-NDEAIDLLVEQTAQLSSPDSLIGIFQLGGAAARGGERSCFPSRHARFMVNYATHWTEARE-DDLHRQWTRDAIEALAPYG----LGTAYVNFTADDAPMHVETLYSTTEFSRLVTLKNRLDPDNVFRNNHNIRPSA |
2BVF Chain:A ((8-457)) | ----------TPLSIQGEVIYPDDSGFDAIANIWDGRHLQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYATNDGGIVLDLRLMNSIHIDTAGSRARIGGGVISGDLVKEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSDDERPELFWAVRGAGPNFGVVTEVEVQLYELPRKMLAGFITWAPSVSELAGLLTSLLDALNEMADHIYPSVFVGVDEN---------RAPSVTVCVGHLGGLDIAERDIARLRGLGRTVSDSIAVRSYDEVVALNAEVGSFEDGMSNLWIDREIAMPNARFAEAIAGNLDKFVSEPASGGSVKLEIEGMPFGN-PKRTPARHRDAMGV-LALAEWSGAAPGSEKYPELARELDAALLRAGVTTSGFGLLNNNSEVTA-EMVAEVYKPEVYSRLAAVKREYDPENRFRHNYNIDPE- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2BVF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -212378 for 3961 contacts (-53.6/contact) +
2D Compatibility (PS) -47854 + (NN) -28931 + (LL) 1388
1D Compatibility (HY) -18800 + (ID) 6150
Total energy: -312725.0 ( -78.95 by residue)
QMean score : 0.514
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