Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MSQIMYNYPAMMAHAGDMA-GYAGTLQSLGADIASEQAVLSSAWQGDTGITYQGWQTQWNQALED-LVRAYQSMSGTHESNTMAMLARDGAEAAKWGG
4LWS Chain:B ((4-91))
SPSVSDYTRANFGGLSEGEAQFSMT-ARALLDELTDLEGKLRAKLDRWDGDAQAAYWNYQKEWDAAAKDMQ-------------NVVAQLGVAIREAHDNYQ
General information:
TITO was launched using:
RESULT:
Template:
4LWS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12124 for 388 contacts (-31.2/contact) +
2D Compatibility (PS) -8731 + (NN) 895 + (LL) 892
1D Compatibility (HY) 800 + (ID) 850
Total energy: -19118.0 ( -49.27 by residue)
QMean score : 0.208
(partial model without unconserved sides chains):
PDB file :
Tito_4LWS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LWS-query.scw
PDB file :
Tito_Scwrl_4LWS.pdb
: