Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTPSQWLDIAVLAVAFIAAISGWRAGALGSMLSFGGVLLGATAGVLLAPHIVSQISAPRAKLFAALFLILALVVVGEVAGVVLGRAVRGAIRNRPIRLIDSVIGVGVQLVVVLTAAWLLAMPLTQSKEQPELAAAVKGSRVLARVNEAAPTWLKTVPKRLSALLNTSGLPAVLEPFSRTPVIPVASPDPALVNNPVVAATEPSVVKIRSLAP-----------------------RCQKVLEGTGFVISPD-RVMTNAHVVAGSNNVTVYAG-DKPFEATVVSYDPSVDVAILAVPHL--PPPPLVFAAE-PAKTGADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPEPVTRDVYTIRADVEQGDSGGPLIDLNGQVLGVVFGAAID--DAETGFVLTAGEVAGQLAKIGATQPVGTGACVS |
1L1J Chain:A ((29-250)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IVNVVEACAPAVVKIDVVKTTSFFDPYFEQFFKKWFGELPPGFERQVASLGSGFIFDPEGYILTNYHVVGGADNITVTMLDGSKYDAEYIGGDEELDIAVIKIKASDKKFPYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGVVSATNRRIP--KPDGS-GYYVGLIQTDAAINPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTIL------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1L1J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -124320 for 1612 contacts (-77.1/contact) +
2D Compatibility (PS) -20770 + (NN) -5405 + (LL) 16668
1D Compatibility (HY) -9200 + (ID) 2600
Total energy: -145627.0 ( -90.34 by residue)
QMean score : 0.366
|
|
|