Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTVLKMTDLDLKGKRVLIREDLNVPVKDGQVQSDARIKAALPTLKLALEKGAAVMVCSHLGRPTEGEFSAENSLKPVAEYLSKALGREVPLLADYLDGVEVKA-------GDLVLFENVRFN--------------KGEKKNADELAQKYAALCDVFVMDAFGTAHRAEGSTHGVARFAKVAAAGPLLAAELDALGKALGNPARPMAAIVAGSKVSTKLDVLNSLAGICDQLIVGGGIANTFLAA-AGHKVGKSLYE---ADLVE--TAKAIAAKVKVPLPVDVVVAKEFAESAVATVKAIAEVADDDMI------LDIGPQTAAQFAELLKTSKTILWNGPVGVFEFDQFGEGTRTLANAIADSAAFS---IAGGGDTLAAIDKYGIAERISYISTGGGAFLEFVEGKVLPAVEILEQRAKG |
1FW8 Chain:A ((1-343)) | ---------------------------------------------------------------------SKYSLAPVAKELQSLLGKDVTFLNDCV-GPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGFDLPQR--AAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAF--SADANTKT---VTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSEKKSL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1FW8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -176893 for 2457 contacts (-72.0/contact) +
2D Compatibility (PS) -33222 + (NN) -7059 + (LL) 6080
1D Compatibility (HY) -24800 + (ID) 6900
Total energy: -242794.0 ( -98.82 by residue)
QMean score : 0.469
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