Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGLIAEDLGVAVDQVNVKATTTERLGFTGREEGIAVHAVALLMAR
3QHD Chain:B ((24-178))
FRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFS--------ADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVV--
General information:
TITO was launched using:
RESULT:
Template:
3QHD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122059 for 1243 contacts (-98.2/contact) +
2D Compatibility (PS) -16199 + (NN) -9553 + (LL) 128
1D Compatibility (HY) -15200 + (ID) 4400
Total energy: -167283.0 ( -134.58 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_3QHD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QHD-query.scw
PDB file :
Tito_Scwrl_3QHD.pdb
: