Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLKDKVIIITGGCQGLGRAMGEYLAGKGARLALVDLNRERLDEAVAACKAAGGDARAYV-CNVADEEQVTHMVAQVASDFGAINGLVNNAGILRDGLTIKVKDGQLSKMSLAQWQSVIDVNLTGVFLCTREVAAKMIELKNEGAIVNISSI-SRAGNMGQANYSAAKAGVAADTVVWAKELARYGIRVAGVAPGFIETEMTAGMKPEALEKMTAGIPLKRMGKPVEIAHSVAYIFEND---YYTGRVLELDGGLRL
4DMM Chain:B ((24-266))
LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDD--------WQSVLDLNLGGVFLCSR-AAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTS---------LLEVIPLGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGL--
General information:
TITO was launched using:
RESULT:
Template:
4DMM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139336 for 2060 contacts (-67.6/contact) +
2D Compatibility (PS) -25036 + (NN) -6557 + (LL) 1764
1D Compatibility (HY) -18400 + (ID) 5250
Total energy: -192815.0 ( -93.60 by residue)
QMean score : 0.453
(partial model without unconserved sides chains):
PDB file :
Tito_4DMM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DMM-query.scw
PDB file :
Tito_Scwrl_4DMM.pdb
: