Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQRVYVALGSNLAEPREQIQAALDAFERLPETRLVAVSPLYISDPLGPADQPRFVNGVAALDTNLAPLDLLDALQAIELEQGRVRDLRWGPRTLDLDILLFGEQLLDLPRLKVPHYHMQARAFVLYPLADLAPDLRLPDGRHLPELLAACPFEGIERLPGA
4CYU Chain:C ((4-144))
MIQ-AYLGLGSNIGDRESQLNDAIKILNEYDGISVSNISPIYETAPVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKTEECLHRIRKERWGPRTLDVDILLYGEEMIDLPKLSVPHPRMNERAFVLIPLNDIAANVVEPRSK--------------------
General information:
TITO was launched using:
RESULT:
Template:
4CYU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87117 for 1071 contacts (-81.3/contact) +
2D Compatibility (PS) -15016 + (NN) -8240 + (LL) 1320
1D Compatibility (HY) -14800 + (ID) 2950
Total energy: -126803.0 ( -118.40 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_4CYU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CYU-query.scw
PDB file :
Tito_Scwrl_4CYU.pdb
: