Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQEVRFSRLEPEQRKALLIEATLACLKRHGFQGASVRKICAEAGVSVGLINHHYDGKDALVAEAYLAVTGRVMRLLRGAIDTAPGGARPRLSAFFEASFSAELLDPQLLDAWLAFWGAVGSIEAIGRVHDHSYGEYRALLVGVLRQLAEEGGWADFDAELAAISLSALLDGLWLESGLNPATFTPRQGVQICEAWVDGLEAGAHRRFRRAMEAC
2NX4 Chain:A ((1-189))
-----VPKLVDHDERRRSITAAAWRLIAARGIEAANMRDIATEAGYTNGALSHYFAGKDEILRTSYEHISEATDRRIAEALG--DATGLDALRILCREVMPINEEQLLEARIAASLWPRAMYDEQMAATNRRTMDNWREQMAIFLEQAREEGSVGDIDVTIVVEQLLNMMMGMQILGVLTPGETSSERQLEMLEQF-------------------
General information:
TITO was launched using:
RESULT:
Template:
2NX4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116938 for 1384 contacts (-84.5/contact) +
2D Compatibility (PS) -20820 + (NN) -14092 + (LL) 2312
1D Compatibility (HY) -6800 + (ID) 1650
Total energy: -157988.0 ( -114.15 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_2NX4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NX4-query.scw
PDB file :
Tito_Scwrl_2NX4.pdb
: