Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGTLYIVSAPSGAGKTSLVKALLDAAPE-VRVSVSHTTRGMRPGEVDGVNYHFTSREEFLAMLERNEFLEHAEVFGNLYGTSQRWVEKTLAEGLDLILEIDWQGAQQVRRLMPEAQSIFILPPSQEALRQRLTNRGQDSDEVIERRMREAVSEMS---HYVEYDHLVINDDFAHALDDLKAIFRARQLRQDAQQQRHAELLGRLLA
1LVG Chain:A ((5-190))
---RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYATLKQALSEEIK------------------
General information:
TITO was launched using:
RESULT:
Template:
1LVG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57002 for 1378 contacts (-41.4/contact) +
2D Compatibility (PS) -20541 + (NN) -13002 + (LL) 1824
1D Compatibility (HY) -9200 + (ID) 3350
Total energy: -101271.0 ( -73.49 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_1LVG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LVG-query.scw
PDB file :
Tito_Scwrl_1LVG.pdb
: