Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNYIKVHQPLNVDLRTQKTQTKLYTVLERFYLEGRTFESISIKDLCEQAQISRATFYRHHEEIIQIIEVQILRTMQYFSLEFDQIIL-------TKENIQRLILRSIQKNPLLFQAIFWSRA----EN-------IFLDVVSGEILRISLLKEISFSDSNFIPNCFARMILSLAAEIQQSNKDYTNGQLVELIQEAARFLQK
3PAS Chain:A ((3-170))
-------------RQRDDSKRIAFLEATVREVA-DHGFSATSVGKIAKAAGLSPATLYIYYEDKEQLLLATFYYVSDQVIDAALDSFSRGKDLREGLRRQWHTLFRIGLERPELFRYHETFTHSAWMTPEIQARNESRAANLLNAVDQGKQSGLIKPVPFPLLETFMFRPIYHLVQRCLQGS---------------------
General information:
TITO was launched using:
RESULT:
Template:
3PAS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98254 for 998 contacts (-98.5/contact) +
2D Compatibility (PS) -16029 + (NN) -5838 + (LL) 2972
1D Compatibility (HY) 1200 + (ID) 1000
Total energy: -116949.0 ( -117.18 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_3PAS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PAS-query.scw
PDB file :
Tito_Scwrl_3PAS.pdb
: