Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVATLIIIRGNSASGKSKIAKQLQAELGENTLLLSQDYLRREMLGTK-----DGEN-TTTIPLLINLLNYGYHNCSYII-LEGILRSDWYTPVWKHILKHNPNNTYAYYYDLSFQETVKRHSTRLKSLEFGE----DSLARWWLEK-DFLKEIPEKILTKAM-SLEDVKKLIMTDVLP
2IYV Chain:A ((2-167))
--APKAVLVGLPGSGKSTIGRRLAKAL--GVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTSPG---VRAAL----AGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQV
General information:
TITO was launched using:
RESULT:
Template:
2IYV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75702 for 1141 contacts (-66.3/contact) +
2D Compatibility (PS) -16587 + (NN) -8432 + (LL) 324
1D Compatibility (HY) -2800 + (ID) 1150
Total energy: -104347.0 ( -91.45 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_2IYV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IYV-query.scw
PDB file :
Tito_Scwrl_2IYV.pdb
: