Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNFSGNWKIIRSENFEEMLKALGVNMMMRKIAVAAASKPAVEIKQENDTFYIKTSTTVRTTEINFKIGEEFEEQTVDGRPCKSLVKWESGNKMVCEQRLLKGEGPKTSWSRELTNDGELILTMTADDVVCTRVYVRE
1FDQ Chain:A ((1-131))
VEAFCATWKLTNSQNFDEYMKALGVGFATRQVG--NVTKPTVIISQEGDKVVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSVVSLD-GDKLVHIQ---KWDGKETNFVREIK-DGKMVMTLTFGDVVAVRHYEKA
General information:
TITO was launched using:
RESULT:
Template:
1FDQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32871 for 913 contacts (-36.0/contact) +
2D Compatibility (PS) -14744 + (NN) -6358 + (LL) 680
1D Compatibility (HY) -11200 + (ID) 2850
Total energy: -67343.0 ( -73.76 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_1FDQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FDQ-query.scw
PDB file :
Tito_Scwrl_1FDQ.pdb
: