Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFMKKYLLPILGLFMAYYYYSANEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEECALEIIKGGALRQEEVYYDSSLWTTLLIRNPCRKILEFLYSTSYNMDRFINK
3D5Q Chain:C ((4-261))
-----------------------NEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAV------QAAPKEECALEIIKGGALRQEEVYYDSSLWTTLLIRNPSRKILEFLYS-----------
General information:
TITO was launched using:
RESULT:
Template:
3D5Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -196063 for 2149 contacts (-91.2/contact) +
2D Compatibility (PS) -27526 + (NN) -11475 + (LL) 3512
1D Compatibility (HY) -38800 + (ID) 12550
Total energy: -282902.0 ( -131.64 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_3D5Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D5Q-query.scw
PDB file :
Tito_Scwrl_3D5Q.pdb
: