Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK
3FDM Chain:B ((32-146))
----------------------------------------------------------------------------------MAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGN------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3FDM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79706 for 757 contacts (-105.3/contact) +
2D Compatibility (PS) -12313 + (NN) -1951 + (LL) 6296
1D Compatibility (HY) -17600 + (ID) 5750
Total energy: -111024.0 ( -146.66 by residue)
QMean score : 0.348
(partial model without unconserved sides chains):
PDB file :
Tito_3FDM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FDM-query.scw
PDB file :
Tito_Scwrl_3FDM.pdb
: