Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGGHPQLRLVKALLLLGLNPVSASLQDQHCESLSLASNISGLQCNASVDLIGTCWPRSPAGQLVVRPCPAFFYGVRYNTTNNGYRECLANGSWAARVNYSECQEILNEEKKSKVHYHVAVIINYLGHCISLVALLVAFVLFLRLRPGCTHWGDQADGALEVGAPWSGAPFQVRRSIRCLRNIIHWNL--ISAFILRNATWFVVQLTMSPEVHQSNVGWCRLVTAAYNYFHVTNFFWMFGEGCYLHT-------AIVLTYSTDRLRKWMF---ICIGWGV-----------PFPIIVAWAIGKLYYDNEKCW---FGKRPGVYTDYIYQGPMI---LVLLIN-------FIFLFNIVRILMTKLRASTTSETIQY-RKAVKATLVLLPLLGITYMLFFVNPGEDE------VSRVVFIYFNSFLESFQGFFVSVFYCFLNSEVRSAIRKRWHRWQDKHSIRARVARAMSIPTSPTRVSFHSIKQSTAV |
| 4U6D Chain:A ((28-409)) | -EGFPFILPKEK----PNRPLSAAMQRNYDNYMA---------------------PRPENNELYTQ----FKYTELKGFDYNGH-----DGTISRR-------------DPSKVIYENG-----------------KYYVWYTYRN-------------------TPTPPQGAKNSNDTIPSADWDLAEIWYATSKDGFTWEEQGVAVPRPPKPNVGW-RSVTT-TDILKWKGKFYLYYQGFMEASGTRGDDCPVAVSYADSPDGPWTPHTEVVIPNGKKGEWDQYSIHDPYPIVYKDKI-YLYYKSDFDGDPNLVRMQGLAIADNPLGPFKKSPLNPVINSGHETTLFPFKEGMAALV---IRDGTEHNTVQYAEDGVNFNIASIVEFMPNAAGPYVADAFTNTKYGRGISWGISHFTNATTWDQNHAVLARFDCDLSLDVDDPHMKRLGTYF-----KPEFYYQMGL----------SKKQRERI |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U6D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -257175 for 2576 contacts (-99.8/contact) +
2D Compatibility (PS) -35959 + (NN) -2658 + (LL) 6924
1D Compatibility (HY) -4800 + (ID) 3700
Total energy: -297368.0 ( -115.44 by residue)
QMean score : 0.225
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