Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPPCQPQRPLLLLLLLLACQPQVPSAQVMDFLFEKWKLYGDQCHHNLSLLPPPTELVCNRTFDKYSCWPDTPANTTANISCPWYLPWHHKVQHRFVFKRCGPDGQWVRGPRGQPWRDASQCQMDGEEIEVQKEVAKMYSSFQVMYTVGYSLSLGALLLALAILGGLSKLHCTRNAIHANLFASF------VLKASSVLVIDGLLRTRYSQKIGDDLSVSTWLSDGAVAGCRVAAVFMQYGIVANYCWLLVEGLYLHNLLGLATLPERSFFSLYLGIGWGAPMLFVVPWAVVKCLFENVQCWTSNDNMGFWWILRFPVFLAILINFFIFVRIVQLLVAKLRARQMHHTDYKFRLAKSTLTLIPLLGVHEVVFAFVTDEHAQGTLRSAKLFFDLFLSSFQGLLVAVLYCFLNKEVQSELRRRWHRWRLGKVLWEERNTSNHRASSSPGHGPPSKELQFGRGGGSQDSSAETPLAGGLPRLAESPF |
2RDB Chain:B ((8-329)) | --ALKPLKTWSHLA-----GNRRRPSEYEVVS------TNLHYFTDNPERPWELD----SNLPMQTWYKKYCFDSPLKHD-DWNA-----------------------------FRDPDQLVYRTYNLLQDGQESYVQGLFDQLNDRGHDQMLTREWVETLARFYTPARYLFHALQMGSVYIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCY---PDVGFGKRERDVWEND----------------------------------------------PAWQGFRELIEKAL--IAWD------WGEAFTAINLVTKPAVEEALLQQLGSLAQSEG----------DTLLGLLAQAQKRDAERHRRWSSALVKMALEKEG----------------------NREVLQKWVAKWEP-LADKAIEAYCSALP--------------------DGENAIVEAKSASRYVRQMMG---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2RDB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -141884 for 2500 contacts (-56.8/contact) +
2D Compatibility (PS) -32766 + (NN) -11147 + (LL) 10612
1D Compatibility (HY) 9600 + (ID) 1550
Total energy: -167135.0 ( -66.85 by residue)
QMean score : 0.327
|
|
|