Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAAPSPSGGGGSGGGSGSGTPGPVGSPAPGHPAVSSMQGKRKALKLNFANPPFKSTARFTLNPNPTGVQNPHIERLRTHSIESSGKLKISPEQHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIP----EEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDS-IAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILMYEERAVEVACYVCKILDQMPATPSSPMYVD |
4O27 Chain:B ((6-274)) | ---------------------------------------------------------------------------------------------------ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEI-TVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGG---------SALDLLEPGPLDETQIATILREILKGLDYLHSEKKI-HRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNEFVGTPFWMAPEVIKQSA----YDSKADIWSLGITAIELARGEPPHSELHPM-KVLFLIPKNNPPTL----EGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFIL----RNAKKTSYLTELIDRYKRWKAE----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4O27.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -113872 for 2147 contacts (-53.0/contact) +
2D Compatibility (PS) -27498 + (NN) -17393 + (LL) 2688
1D Compatibility (HY) -19200 + (ID) 5100
Total energy: -180375.0 ( -84.01 by residue)
QMean score : 0.312
|
|
|