Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKFVRLLSSILVALSVIFLGYCYFTKKGIFAPAVIHNAEVKIGGDFSLINQDGQVIRSND--FKDKYMMIFFGFSSCKKICPMNLGIISETLAKLDEKTSDK-LQT-FFITVDPECDSTEKLKEFQQQFDYRIQMLTGERKKIDEVIANYKVYTSKVGGEEGINHSSIIYLIGPGGKYVTHFAADLNSDESQSDKIAAEIKKYINEL
3FW2 Chain:A ((3-150))
-----------------------AKSEIGKYAP------------FFSLPNAKGEKITRSSDAFKQKSLLINFWASWND---SISQKQSNSELREIYKKYKKNKYIGMLGISLD---VDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQY-----------SIYKIPANILLSSDGKILAK--------NLRGEELKKKIENIVEEA
General information:
TITO was launched using:
RESULT:
Template:
3FW2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63794 for 1091 contacts (-58.5/contact) +
2D Compatibility (PS) -16175 + (NN) -10981 + (LL) 4780
1D Compatibility (HY) -4400 + (ID) 1450
Total energy: -92020.0 ( -84.34 by residue)
QMean score : 0.634
(partial model without unconserved sides chains):
PDB file :
Tito_3FW2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FW2-query.scw
PDB file :
Tito_Scwrl_3FW2.pdb
: