Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNLESLPKHLAIIMDGNSRWANSQGRVKIDGYRKGSEVAYDIAKHCIALAIPYLTLYAFSMENWLRPKEETDCLFDLFYSILTDRDKVNFFHNY-------NIKLNFVGNLSLLPGKILNQIKESEEMTRKNDGLLLTVAVSYGAKQEIIHAVRNITRK------NIDCVSEDEFEKFLYTKDLPKLDLLIRTGGEKRLSNFLLWQAAYAELYFCDTLWPDFSCQDLSKALEDYTKREKRYGR
4H8E Chain:A ((19-251))
-LDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNL---------PVNFLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGG
General information:
TITO was launched using:
RESULT:
Template:
4H8E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129684 for 1711 contacts (-75.8/contact) +
2D Compatibility (PS) -23081 + (NN) -211 + (LL) 784
1D Compatibility (HY) -18000 + (ID) 4450
Total energy: -174642.0 ( -102.07 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_4H8E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H8E-query.scw
PDB file :
Tito_Scwrl_4H8E.pdb
: