Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMCKLEWDDEIN---FGKISFLSHSHIPDRKTGLELAEKYGIDGVMIGSGIFHNPFAFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRALANFDIN
1P4C Chain:A ((265-356))
----SPMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALA-LGAEAVLLGRATLYGLAARG----ETGVDEVLTLLKADIDRTLAQIG--CPDITSLSPDYLQNE------------
General information:
TITO was launched using:
RESULT:
Template:
1P4C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15383 for 557 contacts (-27.6/contact) +
2D Compatibility (PS) -9159 + (NN) -3390 + (LL) 1552
1D Compatibility (HY) -800 + (ID) 650
Total energy: -27830.0 ( -49.96 by residue)
QMean score : 0.238
(partial model without unconserved sides chains):
PDB file :
Tito_1P4C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P4C-query.scw
PDB file :
Tito_Scwrl_1P4C.pdb
: