Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MERVLITGGAGFIGSH-LVDDLQQDYDVYVLDNYRTGKREN---IKSLADDH--VFELDIREYDAVEQIMKTYQFDYVIHLAALVSVAESVEKPILSQEINVVATLRLLEIIKKYNSHIKRFIFASSAAVYGDLPDLPKSDQ-SLILPLSPYAIDKYYGERTTLNYCSLY-NIPTAVVKFFNVFG--PRQDPKSQYSGVISKMFD-----SFEHNKPFTFFG------DGLQTRDFVYVYDVVQSVRLIME---HKDAIGHGYNIGTGTFTNLLEVYRIIGELYGKSVEHEFKEARKGDIKHSYADISNL-KALGFVPKYTVETGLKDYFNFEVDNIEEVTAKEVEMS |
1KVU Chain:A ((2-329)) | --RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN--VKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQ--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KVU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -175350 for 2573 contacts (-68.2/contact) +
2D Compatibility (PS) -31712 + (NN) -5185 + (LL) 1636
1D Compatibility (HY) -18000 + (ID) 5200
Total energy: -233811.0 ( -90.87 by residue)
QMean score : 0.474
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