Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKVLYITAHPFNELV--SNSMAAGKAFIETYQQQHPDDEVKHIDLFET--YIPV----------IDKDVLTGWGKMSNGETLTDDEQMKVSRLSDILEEFLSADKYVFVTPMWNLSFPPVVKAYIDAISIAGKTFKYSAEGPQGLLTDKKVLHIQSRGGYYTEGPAADFEMGDRYLRTIMTFLGVPSYETIIIEGHNAEPHKTEEIKATSINNAEKLATTF
2HPV Chain:A ((2-208))
-SKLLVVKAHPLT--KEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFE-------TLSENQQQKVARFNELTDQFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYE-G----KDFASQYIKAILNFIGVDQVDGLFIEGIDHFPDRAEELLNTAMTKATEYGKTF
General information:
TITO was launched using:
RESULT:
Template:
2HPV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97021 for 1469 contacts (-66.0/contact) +
2D Compatibility (PS) -21088 + (NN) -8154 + (LL) 588
1D Compatibility (HY) -16400 + (ID) 3750
Total energy: -145825.0 ( -99.27 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_2HPV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HPV-query.scw
PDB file :
Tito_Scwrl_2HPV.pdb
: