Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAFITFEGPEGSGKTTVINEVYHRLVKDYD-----VIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI
3V9P Chain:B ((27-216))
---FITFEGID---KTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLN-QPMDLETEALLMFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASAR-RGAVRMPDKFESESDAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQI---------------
General information:
TITO was launched using:
RESULT:
Template:
3V9P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65243 for 1304 contacts (-50.0/contact) +
2D Compatibility (PS) -20012 + (NN) -12155 + (LL) 1632
1D Compatibility (HY) -12400 + (ID) 3350
Total energy: -111528.0 ( -85.53 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_3V9P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V9P-query.scw
PDB file :
Tito_Scwrl_3V9P.pdb
: