Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQAYLGLGSNIGDRESQLNDAIKILNEYDGISVSNISPIYETAPVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKTEECLHRIRKERWGPRTLDVDILLYGEEMIDLPKLSVPHPRMNERAFVLIPLNDIAANVVEPRSKLKVKDLVFVDDSVKRYK
1RU2 Chain:A ((3-136))
---AYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPP------PDYLNAAVALETSLAPEELLNHTQRIE-----LQQGRGGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEM----------------
General information:
TITO was launched using:
RESULT:
Template:
1RU2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99200 for 958 contacts (-103.5/contact) +
2D Compatibility (PS) -13408 + (NN) -6712 + (LL) 2668
1D Compatibility (HY) -11600 + (ID) 2500
Total energy: -130752.0 ( -136.48 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_1RU2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RU2-query.scw
PDB file :
Tito_Scwrl_1RU2.pdb
: