Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESI-RYVDLVIPEKGWGQKEDDVEKFDVDVFVMGHDW----EGEFDFLK------DKCEVIYLK---RTEGISTTKIKQELYGKDAK
3K9W Chain:A ((22-160))
MVVAVYPGTFDPLTRGHEDLVRRASSIFDTLVVGVADSRA-----KKPFFSLEERLKIANEVLGHYPNVKVMGFTGLLKDFVRANDARVIVRGLRAVSDFEYEFQMAGMNRYLLPDVETMFMTPSDQYQFISGTIVREIAQLGG--
General information:
TITO was launched using:
RESULT:
Template:
3K9W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64403 for 867 contacts (-74.3/contact) +
2D Compatibility (PS) -13660 + (NN) -2648 + (LL) 560
1D Compatibility (HY) -3600 + (ID) 1650
Total energy: -85401.0 ( -98.50 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_3K9W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K9W-query.scw
PDB file :
Tito_Scwrl_3K9W.pdb
: