Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHPLQPHTDAVEV
3M6R Chain:B ((42-147))
----------------------------------------------------------IGLSAPQVGLNVQLM-VFNPAGEPGEGKEIVLVNPKIKKYS--DKLVPFDEGCLSFPGIYAEVV-RPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRM---------------
General information:
TITO was launched using:
RESULT:
Template:
3M6R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52072 for 735 contacts (-70.8/contact) +
2D Compatibility (PS) -11335 + (NN) -2988 + (LL) 5944
1D Compatibility (HY) -13200 + (ID) 2150
Total energy: -75801.0 ( -103.13 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_3M6R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M6R-query.scw
PDB file :
Tito_Scwrl_3M6R.pdb
: