Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
1SMT Chain:A ((24-121))
---ELQAIAPEVAQSLAEFFAVLADPNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIVALYQNALDHLQEC-----
General information:
TITO was launched using:
RESULT:
Template:
1SMT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46430 for 578 contacts (-80.3/contact) +
2D Compatibility (PS) -10391 + (NN) -5306 + (LL) 428
1D Compatibility (HY) -9600 + (ID) 1600
Total energy: -72899.0 ( -126.12 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_1SMT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SMT-query.scw
PDB file :
Tito_Scwrl_1SMT.pdb
: