Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEFYASLKSIAMHVPSERVKNAEFQQFLDTSDEWIEKRTGIKERRFANDEEKSSDLGVIAAKQAIERAHLTPQDIDLVVVATLSPDFLAMPSTACVLSAKLGIENKPAFDISAACTGFIYLLSVAKAYVESGMYENVLIVGAEKTSSVLDFKDRGTCILFGDGAGACVIGRTKRLKESVLDVQISANG--------NFSNYLYTPRTLKPTPFNAKEEALEPFLRMKGNEVFKLAVKTLLKDVETILEKNALKPEDVRLFIPHQANFRIIQAVREHLDFKDEQVV-LTVHKYGNTSAASIPMAMCEAYEEGRLKKGDLMLLDAFGGGLTW-GSALVYFGGI |
| 1MZJ Chain:B ((11-330)) | ---FSRVLGVGSYRPRREVSNKEVCTWIDSTEEWIETRTGIRSRRIAEPDETIQVMGVAASRRALEHAGVDPAEIDLVVVSTMT-NFVHTPPLSVAIAHELGADNAGGFDLSAACAGFCHALSIAADAVESGGSRHVLVVATERMTDVIDLADRSLSFLFGDGAGAAVVGPSDVPGIGPVVRGIDGTGLGSLHMSSSWDQYVEDPSVGRPA------------LVMDGKRVFRWAVADVVPAAREALEVAGLTVGDLVAFVPHQANLRIIDVLVDRLGVPEHVVVSRDAEDTGNTSSASVALALDRLVRSGAVPGGGPALMIGFGAGLSYAGQALLLPDPP |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MZJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -193223 for 2856 contacts (-67.7/contact) +
2D Compatibility (PS) -32664 + (NN) -8489 + (LL) 1048
1D Compatibility (HY) -22800 + (ID) 5700
Total energy: -261828.0 ( -91.68 by residue)
QMean score : 0.441
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