Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKDYQKLIVYLCDFLEKEVQKKGFKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPESRTDALNLCEKFSIPYTEYSIAPYDKIFGSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSNKSERMLGYGTLFGDLACAINPIGELFKTEVYELAYYLNIPKKILNKPPSADLFVGQSDEKDLGYPYSVIDPLLKDIEALFQTKPIHLETLIQLGYAEILVKNIISRIQKNAFKLELPTIAKRFNPE
3P52 Chain:A ((3-248))
-AMDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCKRALKENVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLVSLGNFAARIRMSLLYDYSALKNSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKSEIYALAKYLNLHENFIKK-----------------FSYTKIDEGLKALETND-------EKL-LRTLDPSLIAMLKNRMQKNAFKGKMPEILE-----
General information:
TITO was launched using:
RESULT:
Template:
3P52.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138783 for 1724 contacts (-80.5/contact) +
2D Compatibility (PS) -24405 + (NN) -9706 + (LL) 1248
1D Compatibility (HY) -22000 + (ID) 5200
Total energy: -198846.0 ( -115.34 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_3P52.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P52-query.scw
PDB file :
Tito_Scwrl_3P52.pdb
: