Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFEKWIGLTLLLSSLGYPCQKVSISFKQYENLIHIHQKGCNNEVVCRTLISIALLESSLGLNNKREKSLKDTSYSMFHITLNTAKKFYPTYSKTLLKTKLLNDVGFAIQLAKQILKENFDYYHQKHPNKSVYQLVEMAIGAYNGG-----------MKHNPNGAYMKKFRCIYSQ--VRYNE
3W6B Chain:A ((24-183))
---------PPTNPPTTVTKPAEVPSRIWTYVMNADNAYGKGGDFALLLSAVIKKESYFGDGLSGSPS---AGDGLMQVEPNTRNAYLSQFSAKYGHAYNHSSEQDQVYMGSLILNEKIVRFGS----------IYSGLLHYNGGDYWYPGATDSYGRPILADQYANTVYAQYKSYGGRYSR
General information:
TITO was launched using:
RESULT:
Template:
3W6B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47589 for 1110 contacts (-42.9/contact) +
2D Compatibility (PS) -15334 + (NN) -2784 + (LL) 1592
1D Compatibility (HY) 800 + (ID) 950
Total energy: -64265.0 ( -57.90 by residue)
QMean score : 0.417
(partial model without unconserved sides chains):
PDB file :
Tito_3W6B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W6B-query.scw
PDB file :
Tito_Scwrl_3W6B.pdb
: