Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MSSILTDFEPKFLSSDDLLNLYAEYCNGHYCDFKYKQR-RLSDGNIQSHLYFKKDHFIHDYNGIETFKRFIAVKAYDVDNITSLALSNLLCEKFNLDILLTIEAMDKERALFFIRERKKRSKDISYQNIEYLEQMVSTDRAQIQKVSLSIMVFANSKKELDKKSIIVYNTLKKEGFSAVLESINMRPIFFSFFPERNFLNSRLRPQTSQNI-ASLIMFEKYQEGFKENSWGDCPVSVFKNQNGSAHFFNFQAKQGKDKNDNVVGHTMIIGSTGSGKSTFISFLIANLLTKYDMSVVALDRMNGLEIM-TDFFEGQYNTANTDGGFYINPFSLKDSEENRQFLANWIKFMLNIDSDNQQDNKASQSIDKVIRDTYNYMGDQKNQINLLEIAKNLGSSEQDFNEILKSQGEKIYFKNFQDCLDFSNSPLSVINMDAFANDKKLMGLIAMYLFHKLFFEAKEHNKPFFYSLMKLKTTLCIL---- |
| 3VS8 Chain:A ((7-410)) | HPNSAVLADFIPVQLAKPVPQRITLELTAYGFARAHCLSNGITDEEGFVQVYKTVKEKFDKYAVSPAQIKQRQLVYFPKLTDIR----------FGDGNFDIADPEPDQAHLRLFDIKKDPRGADLKTRHESYAKVVGKGLEQMF-------------EGTLEAPDDLIHVTCS---------GYLAPSPAERMVADRGWFETTVTHSYNMGCYGAFPAIKMAHGMLASAQWGATP----------------------PKTRVDIAHTELMSAHNNIAESRVDNIISATLFSDGLIKYSVYPEDELRRQGLRGLRILAMSEHL----------LPDSADTMTGVPGSHQFVMTLSPL--VPAIIKRHVRAFAVDLLRRAG------------MDFERDKDALSFAIHPGGPKI-VDHVQEELGLAEDQV-AISKSVFLENGNMSSSTIPHILKAYLEEATVGTRIACLGFGPGLTAAGLVLEKI |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VS8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -85191 for 3433 contacts (-24.8/contact) +
2D Compatibility (PS) -40928 + (NN) -2367 + (LL) 5084
1D Compatibility (HY) -3600 + (ID) 2250
Total energy: -129252.0 ( -37.65 by residue)
QMean score : 0.223
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