Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQKKRVFSGIQPTGQIHLGNYLGAIKHWVELQDEYENLFCIVNSHAITLPIEPIFLKSQTYELVKLLLACGISPKQSG---LFIQSEVDEHPALAWLLDCQVSMGEMQRMTQFKDKSLKNPKSVNVGLFNYPILMASDILLYQSD---LVPVGEDQKQHLELTRNVAEKFNRDFGNCFKVPEPLIAKVGARVMGLDDPKVKMSKSHKGANHAIFL-LDEPDVIVKKIKKAATDSMGVIAFD-ETREGVFNLLNIYMLLSDESPEKIEERFRNKGYGDFKKELAEVVIQSLKPIQERYQEI-SDDEVKAVLNCGAEKARPLARATYQKAKELMGLI- |
| 1D2R Chain:A ((1-326)) | --MKTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPT---QATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS-AGAAAAAAGLLTYPPLMAADILLY---NTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLL-DDAKTIEKKIKSAVTDSEGTIRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1D2R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -176755 for 2479 contacts (-71.3/contact) +
2D Compatibility (PS) -33728 + (NN) -14510 + (LL) 616
1D Compatibility (HY) -29600 + (ID) 8400
Total energy: -262377.0 ( -105.84 by residue)
QMean score : 0.558
|
|
|