Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLMKFQLFIQPKLDVLQGNIVEYEILLRDDS-AV-PRFPLSELEAVLADEELYLAFSEWFSEAFLDVLKK----------YPNDRFAINIAPQQLFYIETLHWLD----KLKSESHRITVEMTEDIFDVPGHKRHLNANDKNAFILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYLPYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIETKETMTLLESHGVSIFQGYLVNKPFPV
3S83 Chain:A ((11-244))
IGRGEITPYFQPIVRLSTGALSGFEALARWIHPRRGMLPPDEFLPLIEE----MGLMSELGAHMMHAAAQQLSTWRAAHPAMGNLTVSVNLSTGEIDRPGLVADVAETLRVNRLPRGALKLEVTESDIM--------RDP---ERAAVILKTLRDAGAGLALDDF---FSSLSYLTRLPFDTLKIDRYFVRTMGNN-AGSAKIVRSVVKLGQDLDLEVVAEGVENAEMAHALQSLGCDYGQGFGYAPALS-
General information:
TITO was launched using:
RESULT:
Template:
3S83.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147925 for 1687 contacts (-87.7/contact) +
2D Compatibility (PS) -23123 + (NN) -13630 + (LL) 748
1D Compatibility (HY) -4000 + (ID) 1800
Total energy: -189730.0 ( -112.47 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_3S83.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S83-query.scw
PDB file :
Tito_Scwrl_3S83.pdb
: