Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKAFLSIGTNIGERLENLNDALRGLAASNQINITNVSSVYETDAVGYEDQAAFLNIAVEIETDFPPIDLLDFCLALELELGRVRLFKWGPRLIDIDVLLYDDVKTDTEKLKIPHPYMKERAFVMIPLIEISPEKSNLVENPALLEEQGVRKIKNQVNW
1RU2 Chain:A ((3-128))
---AYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPP------PDYLNAAVALETSLAPEELLNHTQRIELQQGR-----GGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPE-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1RU2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114149 for 897 contacts (-127.3/contact) +
2D Compatibility (PS) -12835 + (NN) -5194 + (LL) 3132
1D Compatibility (HY) -10400 + (ID) 2500
Total energy: -141946.0 ( -158.25 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_1RU2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RU2-query.scw
PDB file :
Tito_Scwrl_1RU2.pdb
: