Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTFKGFDKDFNITDKVAVVTGAASGIGKAMAELFSEKGAYVVLLDIK-EDVKDVAAKINPS---RTLALQVDITKKENIEKVVAEIKKVYPKIDILANSAGVALLEKAEDLPEEYWDKTMELNLKGSFLMAQIIGREMIATGGGKIVNMASQASVIALDKHVAYCASKAAIVSMTQVLAMEWAPYNINVNAISPTVILTELGKKAWAGQVGEDMKKLIPAGRFGYPEEVAACALFLVSDAASLITGENLIIDGGYTIK |
| 2PNF Chain:A ((2-246)) | --------EIKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDM-TAVLSEEIKQKYKEQIPLGRFGSPEEVANVVLFLCSELASYITGEVIHVNGG---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PNF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -153403 for 2060 contacts (-74.5/contact) +
2D Compatibility (PS) -25605 + (NN) -4914 + (LL) 644
1D Compatibility (HY) -18000 + (ID) 4300
Total energy: -205578.0 ( -99.80 by residue)
QMean score : 0.549
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