Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQYKIKEMPLEELEPKVVEGL-LEHKERLGYNIPKKDTEYIGFAALSE-VGEMVGGVTAKISY-GELHVSLLSVDPSTQGSGVGTELMAQIERYGRANSCHHISLTT--FSYQAPEFYRKCGFTELGRVKDFPIKGEEKYFFIKYL
3LOD Chain:A ((-1-151))
AMYTITDIAPTDAEFIALIAALDAWQET--LDLSQLPPQTVIALAIRSPQGEAVGCGAIVLSEEGFGEMKRVYIDPQHRGQQLGEKLLAALEAKARQRDCHTLRLETGIHQHAAIALYTRNGYQTRCAFAPYQP-DPLSVFMEKPL
General information:
TITO was launched using:
RESULT:
Template:
3LOD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46772 for 969 contacts (-48.3/contact) +
2D Compatibility (PS) -14744 + (NN) -3756 + (LL) 68
1D Compatibility (HY) -2800 + (ID) 1450
Total energy: -69454.0 ( -71.68 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_3LOD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LOD-query.scw
PDB file :
Tito_Scwrl_3LOD.pdb
: