Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKVVVKNVTFGEGAPKICVPMVGKTVAALKEEAEMLQTIDLDVVEWRVDFFEDVKDLAKVEAALGEIRAILPETPILFTFRSAKEGGELAVSDEFYFELNETLAGTGKIDLVDVELFNEEADVLRLIETAHKNNVKVVMSNHDFDKTPAKEEIVSRLTRMEALGADLPKIAVMPKSAGDVLTLLDATNTVFEK-ANQPIITMSMAGTGVISRLAGEVFGSAMTFGAAKKASAPGQIDVNELRHVLDLLHKQF
4CLM Chain:B ((2-250))
-KTVTVKNLIIGEGMPKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVLRLRKMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAVNDLRSVLMILH---
General information:
TITO was launched using:
RESULT:
Template:
4CLM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135494 for 2148 contacts (-63.1/contact) +
2D Compatibility (PS) -27303 + (NN) -14416 + (LL) 524
1D Compatibility (HY) -24000 + (ID) 6800
Total energy: -207489.0 ( -96.60 by residue)
QMean score : 0.569
(partial model without unconserved sides chains):
PDB file :
Tito_4CLM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CLM-query.scw
PDB file :
Tito_Scwrl_4CLM.pdb
: