Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQ-THKDINILQKDIFDLT--LSDLSDQNVVVDAYGVSPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQLEHLRSHQAEFSWTYISPSAMFEPGERTGDYQIGKD--HLLFGSDGNSFISMEDYAIAVLDEIERPNHLNERFTVAGK
3E48 Chain:A ((1-199))
MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSIIHPS-FKRIPEVENLVYAAKQSGVAHIIFIGYYADQHNNP-----------FHMSPY--FG-Y--ASRLLST--SGIDYTYVRMAMYMDPLKPYLPELMNMHKLIYPAGDGRINYITRNDIARGVIAIIKNPDTWGKRYLLSG-
General information:
TITO was launched using:
RESULT:
Template:
3E48.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90263 for 1456 contacts (-62.0/contact) +
2D Compatibility (PS) -20757 + (NN) -6923 + (LL) 856
1D Compatibility (HY) -9600 + (ID) 1800
Total energy: -128487.0 ( -88.25 by residue)
QMean score : 0.387
(partial model without unconserved sides chains):
PDB file :
Tito_3E48.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E48-query.scw
PDB file :
Tito_Scwrl_3E48.pdb
: