Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----MKKWMVIISIISLVALLGACGNNDNEKDQEDKSTTDSTTKKAKSSSNESNKAAETKENDTNDKAATTDKGSSNPTKEEKDTSTTT---------DTPKKETPKSPAKTEAFSFS---PSGFK---VSTVESILGGDVTTTYLSSSKSFQKDFEALTLFI---NQYKVEHVINPTKEVSASN-----------------PESYLANKNGYVITLD------ISIKNNSKKDKMYKA--DQISLLGA------SKSVGGSLDNFIPSGFHLI--GSSSDPYNFTAGKTARGLLTFTMDEATYNDLAKDSQIGVPDPSRFDSSS--TKGSSQDNVVAPFPIK-------------------------------------- |
| 3J4Q Chain:B ((9-394)) | GLTELLQGYTVEVLRQQPPDLVDFAVEYFTRLREARRQESDTFIVSPTTFHTQESSAVPVIEEDGESDSDSEDADLEVPVPSKFTRRVSVCAETFNPDEEEEDVVHPKTDEQRCRLQEACKDILLFKNLDQEQLSQVLDAMFEKIVKTDEHVIDQGDDGDNFYVIERGTYDILVTKDNQTRSVGQYDNRGSFGELALMYNTPRAATIIATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIESVPLFKSLEMSERMKIVDVIGEKIYKDGERIIAQGEKADSFYIIESGEVSILIRSKTKSNKNGGNQEVEIAHCHKGQYFGELALVTNKPRAASAYAVGDVKCLVMDVQAFERLLGPCMDIMKRNISHYEEQLVKMFGSN |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3J4Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 24673 for 1417 contacts (17.4/contact) +
2D Compatibility (PS) -29665 + (NN) -4500 + (LL) 0
1D Compatibility (HY) -7600 + (ID) 1900
Total energy: -18992.0 ( -13.40 by residue)
QMean score : 0.235
|
|
|