Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSYEYFPGFYDRLMD-SELYDEWLEFSADFIGD---APKKVLDLACGTAEFALRLSFSGHQVTGVDLSKEMVAVAKEKVAAAEIDLPIIEQDMSKLALKQTFDVVTCFCDSLNYLETEQALEATIQAVSAHLEPNGLFLFDVHSVFKIEQGFKDYSYGDSDEEISTIWNSFPGEHPHSIEHELTFYILGEDDTYNRVDELHKERTYPIATYENLLKKFGFTKIDIYADFSHEKPNKTSERIFFAARK
1Y8C Chain:A ((2-244))-CYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDD--LVSMYISFFVRD-GEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL


General information:
TITO was launched using:
RESULT:

Template: 1Y8C.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114787 for 1915 contacts (-59.9/contact) +
2D Compatibility (PS) -25850 + (NN) -9183 + (LL) 216
1D Compatibility (HY) -19600 + (ID) 3550
Total energy: -172754.0 ( -90.21 by residue)
QMean score : 0.463

(partial model without unconserved sides chains):
PDB file : Tito_1Y8C.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1Y8C-query.scw
PDB file : Tito_Scwrl_1Y8C.pdb: