Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPEMPEVENVRATLQELVPGKKIDQVIVRVPKMIVSTPPDEFVHMLVGQEIEGVRRRGKFLLFDL-TNCTILSHLRMEGKFRLMDENEEVSKHTHIIFHFEDHTELRFLDVRKFGTMEVTNKYGEGETRSIKKLGPEPLTQAFTLTDFATGVKKTSRAIKTALLDQKLVAGVGNIYADEICFEAKVRPERAANSLSDKEIKRIFKATKSIMTEAVALGGSTVRTYVNSQGKLGQYQNKLKVYGKTDEPCVVC-GTPIEKIKLNGRGTHFCPNCQK |
4PD2 Chain:A ((1-271)) | -PELPEVETVRRELEKRIVGQKIISIEATYPRMVL-TGFEQLKKELTGKTIQGISRRGKYLIFEIGDDFRLISHLRMEGKYRLATLDAPREKHDHLTMKFAD-GQLIYADVRKFGTWELISTDQVLPYFLKKKIGPEPTYEDFDEKLFREKLRKSTKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIEILQKAIKLGGSSIRTY-SALGSTGKMQNELQVYGKTGEKCSRGHGAEIQKIKVAGRGTHFCPVCQQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PD2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -91895 for 2188 contacts (-42.0/contact) +
2D Compatibility (PS) -28552 + (NN) -5930 + (LL) 416
1D Compatibility (HY) -21200 + (ID) 5800
Total energy: -152961.0 ( -69.91 by residue)
QMean score : 0.434
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