Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTMYAKNNTSGKDMLSLLEWNKEELTDIIKLAVAMKTNPAHYSHILSGKILG----MIFDKPSTRTRVSFEAGILQLGGQAIVMSSKELQIGRGEPIKDTAHVMSEYIDAIMIRTFSHEKVEELAYHAEIPIINGLTDLHHPCQALADLMTIYEWKD--QLEGIKLAYIGDG-NNVCHSLLLAGAMVGIDIRLAMPKGYEVDETILAKAENLAKQSGGKIFVTEDSKLAVTDADFIYTDVWTSMGQEDENAKRLADFGEKYQVNAELV-SGAKPDYHFLHCLPA-HREE----------------EVTTEIIDGIHSVIYQQAGNRLHAQKALLAAILEAK |
| 4JFR Chain:B ((28-356)) | -------NLRNRNFLKLLDFSTKEIQFLIDLSADLKK--AKYAGTEQKKLLGKNIALIFEKASTRTRCAFEVAAFDQGAQVTYIGPSGSQIGDKESMKDTARVLGRMYDGIQYRGFGQAIVEELGAFAGVPVWNGLTDEFHPTQILADFLTMLEHSQGKALADIQFAYLGDARNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYTDVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCLPAFHNDETTIGKQVADKFGMKGLEVTEEVFESEHSIVFDEAENRMHTIKAVMVATL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JFR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -203329 for 2617 contacts (-77.7/contact) +
2D Compatibility (PS) -33567 + (NN) -18677 + (LL) 780
1D Compatibility (HY) -26400 + (ID) 6350
Total energy: -287543.0 ( -109.88 by residue)
QMean score : 0.545
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