Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTFLEEILAQKEVEVAKMP----LEQVAEK--RKTYSF--YEFLKANTNTMQLIAEVKRASPSKGEINMGVNPVLQAKSYQAAGAGMISVLTDPVFFKGSIEDLREVAKNVGIPVLCKDFIISEKQLIRARNAGATVVLLIISALTEEKLITLFEQALALDLEVLVEVHDQEELAVAQKIGAQLIGVNNRNLHTFEVDIAVSERLASDFSSDACFISESGFRTAEDVARVSQ-KYDAVLVGEALMREATPEVAAKSLKVTR
3QJA Chain:A ((4-260))
ATVLDSILEGVRADVAAREASVSLSEIKAAAAAAPPPLDVMAALR--EPGIGVIAEVK-------------DPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKAGAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLVT--
General information:
TITO was launched using:
RESULT:
Template:
3QJA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157604 for 1969 contacts (-80.0/contact) +
2D Compatibility (PS) -25684 + (NN) -10973 + (LL) 612
1D Compatibility (HY) -18400 + (ID) 4350
Total energy: -216399.0 ( -109.90 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_3QJA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QJA-query.scw
PDB file :
Tito_Scwrl_3QJA.pdb
: