Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVPFRRTSKAKKRKRRTHVKLQLPGMNECSNCG--EYRLSHHVCPECG--------QYDGKDVANS
1JJ2 Chain:Z ((1-56))
---TGAGTPSQGKKNTTTHTK--------CRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSKAGE
General information:
TITO was launched using:
RESULT:
Template:
1JJ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -738 for 189 contacts (-3.9/contact) +
2D Compatibility (PS) -4813 + (NN) -1197 + (LL) 936
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -7762.0 ( -41.07 by residue)
QMean score : 0.742
(partial model without unconserved sides chains):
PDB file :
Tito_1JJ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJ2-query.scw
PDB file :
Tito_Scwrl_1JJ2.pdb
: