Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MWRLTGNSSLPIYLQIVDLIETKIMNGELLPEEKLPPERQLAEMFGVNRSTVVRALDELTARAVIIRKQGSGTTVNAEKWGLFAGQSTNWRHYLTQGGFTPAVPYIRQAGVMERANSDNVIDAASGELPLEMTPKMETPSLSWQSFIA-E----EQQEDEAGYKPLRETIQKQMKEAYGLQ-TRSEQIFITSGAQQALFLITQCLLKPGDAVAIESPSYFYSLSLFQSAGLRIFALPMDEDGVVISELRDLYHK-------HRVKMVFVNPTFQNPTGLVMSLKRRKELVKICAHLQIPIVEDDPFSELGALDNQIPAPLKRLDTD-NVLYIGSLSKIMGSTTRIGWLIGPTAVIERLALARQEMDFGLSIFPQVLANSVLNTAG-YKAHLLQLHHVLEQRRDDLIEAFEAILPS--EVTFIKPKGGFHLWVKLPVEFRSVRDFDIFLANDLLVMPGFLFGVK---EAVIRVTYARLEKKEARRVAEIIKQILVSKKCEEA |
1VP4 Chain:A ((42-421)) | --------------------------------------------------------------------------------------------------------------------DKDAISFGGGVPDPETFPRKELAE-IAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE-TVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLE-RYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGKE-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VP4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -227726 for 3154 contacts (-72.2/contact) +
2D Compatibility (PS) -39428 + (NN) -20578 + (LL) 8932
1D Compatibility (HY) -27200 + (ID) 4250
Total energy: -310250.0 ( -98.37 by residue)
QMean score : 0.543
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