Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNWTIWDKSQKVPYTLLLEADPSEKQIAKYLDKSHVFQLMHDDIVIGIICLFPLN-------------NDQLEIMNIAVSSDYRNQGIGKKLLEKAFDYAIHKHFIKIIVKTGNSSIDQLAFYQKNGFRMQHIIPNYFTENYPNQTITENGIVCLDQIILLKEIKS
3H4Q Chain:A ((60-187))
-------------------------HFEEDIAKDYLYVLEENDKIYGFIVVDQDQAEWYDDIDWPVNREGAFVIHRLTGSKEY--KGAATELFNYVIDVVKARGAEVILTDTFALNKPAQGLFAKFGFHKV------------------------PFYAYYKNLK-
General information:
TITO was launched using:
RESULT:
Template:
3H4Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72481 for 705 contacts (-102.8/contact) +
2D Compatibility (PS) -11235 + (NN) -6390 + (LL) 3040
1D Compatibility (HY) -4800 + (ID) 900
Total energy: -92766.0 ( -131.58 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_3H4Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3H4Q-query.scw
PDB file :
Tito_Scwrl_3H4Q.pdb
: