Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLVLIRHGQSEWNKLNLFTGWHDVDLSQEGVVEAMTAGKRIKEAGLEFDVAFTSVLTRAIKTLNYVLEESDQMWVPVHKSWRLNERHYGALQGLNKQETAEKYGADQVQKWRRSYDTLPPLLEENDE--RQAKNDRRYQLLDTHAIPSGENLKVTLERVIPYWMDTIAPEIKEGRRVVIAAHGNSLRALVKFLEGISDDEIMDLEIPTGVPLVYELNADLKPVNKYYLDK
1YFK Chain:B ((5-227))
-KLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDAGYEFDICFTSVQKRAIRTLWTVLDAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYDVPPPPMEPDHPFYSNISKDRRYADLTEDQLPSCESLKDTIARALPFWNEEIVPQIKEGKRVLIAAHGNSLRGIVKHLEGLSEEAIMELNLPTGIPIVYELDKNLKPI-------
General information:
TITO was launched using:
RESULT:
Template:
1YFK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80354 for 1819 contacts (-44.2/contact) +
2D Compatibility (PS) -23730 + (NN) -7404 + (LL) 540
1D Compatibility (HY) -17600 + (ID) 6300
Total energy: -134848.0 ( -74.13 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_1YFK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YFK-query.scw
PDB file :
Tito_Scwrl_1YFK.pdb
: