Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKDGFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHN-----INGEQEIKDVFVDVEKILASF
1E4V Chain:A ((1-213))
MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQA----DAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL---
General information:
TITO was launched using:
RESULT:
Template:
1E4V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40898 for 1614 contacts (-25.3/contact) +
2D Compatibility (PS) -22723 + (NN) -13083 + (LL) 752
1D Compatibility (HY) -16400 + (ID) 4900
Total energy: -97252.0 ( -60.26 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_1E4V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1E4V-query.scw
PDB file :
Tito_Scwrl_1E4V.pdb
: