Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPHLSKEAFKKQIKNGIIVSCQALPGEPLYTESGGVMPLLALAAQEAGAVGIRAN--S---------VRDIKEIQEVTNLPIIGIIKREYPPQEPFITATMTEVDQLASLDIAVIALDCTLRERHDGLSVVEFIQKIKRKYPEQLLMADISTFEEGKNAFEAGVDFVGTTLSGYTDYSRQ-------------------------------EEGPDIELLNKLCQAG-IDV--IAEGKIHTPKQANEINHIGVAGIVVGGAITR---PKEIAERFISGLS |
2NV1 Chain:A ((13-258)) | -----KRGMAEMQKGGVIMDV--------------INAEQAKIAEEAGAVAVMALER-AGGVARMADPTIVEEVMNAVSIPVMA--K-------ARIG-HIVEARVLEAMGVDYIDESEVLTP-----AD-EEFHLNKNEY-TVPFVCGCRDLGEATRRIAEGASML--RTKGE-PGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEATT |
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General information:
TITO was launched using:
| RESULT:
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Template: 2NV1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -107309 for 1557 contacts (-68.9/contact) +
2D Compatibility (PS) -20274 + (NN) -4290 + (LL) 1224
1D Compatibility (HY) -10000 + (ID) 2200
Total energy: -142849.0 ( -91.75 by residue)
QMean score : 0.561
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