Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARIAGVDIPNDKRVVISLTYVYGIGLSTSKKILAAAGISEDIRVKDLTPDQEDAIRREVD-AIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK
3T1Y Chain:M ((2-122))
-ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKKK
General information:
TITO was launched using:
RESULT:
Template:
3T1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30296 for 752 contacts (-40.3/contact) +
2D Compatibility (PS) -12533 + (NN) -593 + (LL) 208
1D Compatibility (HY) -9200 + (ID) 3600
Total energy: -56014.0 ( -74.49 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_3T1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T1Y-query.scw
PDB file :
Tito_Scwrl_3T1Y.pdb
: